Research Article |
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Corresponding author: Marta Rodríguez-Rey ( marta.rodriguezrg@uah.es ) Academic editor: Francisco J. Oficialdegui
© 2023 Marta Rodríguez-Rey, Sofia Consuegra, Carlos Garcia de Leaniz.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Rodríguez-Rey M, Consuegra S, Garcia de Leaniz C (2023) Models based on chronological data correctly predict the spread of freshwater aliens, and reveal a strong influence of river access, anthropogenic activities and climate regimes. Aquatic Invasions 18(4): 455-472. https://doi.org/10.3391/ai.2023.18.4.111481
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Alien species constitute one of the main threats to freshwater ecosystems, negatively impacting biodiversity, economy, biosecurity and ecosystem services. Predicting the arrival and spread of alien species is of paramount importance to prevent new introductions and control the expansion and establishment of already introduced species. We modelled the distribution of four freshwater invaders in Great Britain, using environmental and anthropogenic predictors, to help focus management actions. The species grouped different taxa including signal crayfish (Pacifastacus leniusculus), the marsh frog (Pelophylax ridibundus), the red-eared slider (Trachemys scripta) and the pike-perch (Sander lucioperca). The modelling approach accounted for methodological limitations and implemented two evaluations, a temporal evaluation using data corresponding to 70% of the oldest records to calibrate models and the remaining 30% for evaluation using various performance metrics (the common AUC, TSS and also null models) and an independent evaluation using the most recent range expansion of the species in the last six years. The distribution of the species was facilitated by multiple environmental and anthropogenic predictors. Road density was the second most important predictor of the occurrence of signal crayfish and red-eared slider preceded by the distance to ports and isothermality for each species respectively. Human population density was the most important predictor of marsh frog presence whereas pike-perch was mostly related to the proximity of boat ramps and precipitation regimes. Our distribution models were accurate and predicted the most recent range expansion of all of the species, highlighting their usefulness for preventing alien species spread and the value of using historical projections, usually available for non-native species, to calibrate and evaluate Species Distribution Models.
aquatic non-native species, human ecology, introduction pathways, management, species distribution models, forecasting
Freshwater ecosystems are among the most endangered ecosystems on the planet (
In addition to the importance of climate on the distribution of alien freshwater species (
Species Distribution Modelling (SDM) is a valuable tool that uses spatially explicit variables to explain and predict the range expansion of alien species and provide options for management actions (
To overcome some of these limitations and investigate the range dynamics of alien species, we applied SDM including multiple predictors related to vectors of introduction and dispersal and correcting for potential error sources (
We used Great Britain as study area as, being an island, it represents a closed system that allows the study of invasion processes without the possible influx of freshwater species from adjacent areas. Great Britain was divided into grids with a 5 Km2 resolution as in previous studies of freshwater species in large areas (
We included signal crayfish (Pacifastacus leniusculus) among the arthropods, the marsh frog (Pelophylax ridibundus) among the amphibians, the red-eared slider (Trachemys scripta) as a reptile, and the pike-perch (Sander lucioperca) amongst the fish. The species had 982, 94, 125 and 164 grid occurrences respectively. These four species represented various taxonomic groups that were deliberately introduced in Great Britain at the end of the 19th century or beginning of the 20th century except for signal crayfish, with a contemporaneous introduction but also a high range expansion. Species distribution data were obtained from the National Biodiversity Network (NBNAtlas) using records between the date of introduction of each species and 2015 for the modelling process; therefore, including a time frame of more than 150 years depending on the species arrival (Suppl. material
To control for sampling bias, we applied “systematic sampling” consisting in pooling occurrences in grids to avoid the effect of overrepresentation of records in oversampled areas, showing the higher performance among other procedures (
We used a combination of both environmental and anthropogenic variables, to assess the relative importance of the predictors for the alien species distribution as in other studies, (
For each species, we analysed the distribution using four different SDM algorithms including Generalised Additive Models [GAM (
Model quality was assessed using True Skills Statistic [TSS (
We calculated the relative contribution of the predictor variables in the best model for each species. For MaxEnt, variable importance corresponded to the resulting contribution percentage supported by jack-knife variable importance analysis (
We evaluated models obtained in the previous steps using the range shift of the species in the same study area after six years (from January 2016 to December 2021) to investigate if the most recent spread of the alien species occurred in the areas predicted by the models. This constitutes another improvement in the evaluation approach using independent data. For this purpose, we evaluated the model predictions with the data corresponding to the real range expansion of the species (i.e., new distribution records) during the last six years published from the same source (NBNAtlas).
We calculated the accuracy of the models to predict the most recent spread of the species by calculating the area under curve AUC using ‘modEvA’ package in R (
The best models explaining the species distribution according to the effect size (i.e., the difference between the real model and the highest 95CI values of the null models for both discrimination statistics) were obtained with GAM for the signal crayfish, the red-eared slider and pike-perch, and with MaxEnt for the marsh frog. (Suppl. material
Relative importance of environmental and anthropic predictors for the best model for each species. The crayfish icon represents the signal crayfish (Pacifastacus leniusculus), the turtle icon represents the red-eared slider (Trachemys scripta), the frog icon corresponds to marsh frog (Pelophylax ridibundus) and the fish icon represents the pike-perch (Sander lucioperca).
For the red-eared slider, isothermality (i.e., mean diurnal range divided by mean annual range of temperature) and temperature in the wettest quarter had the highest relative importance within the environmental variables (19% and 11% respectively) (Fig.
The marsh frog had a distribution mainly marked by the distance to the first introduction site followed by the population density, with a relative importance of 62% and 14% and negative and positive relationships, respectively (Fig.
For the pike-perch, distance to the first record had a relative importance of 23% followed by precipitation seasonality with 14% of importance, both decreasing the probability of its presence (Suppl. material
Based on the predicted suitability for each species (Fig.
Suitability maps for the best model for each species showing the occurrences until 2015 used for model training and testing and the occurrences from 2016 to 2021 to posterior evaluation of the range expansion. The crayfish icon represents the signal crayfish (Pacifastacus leniusculus), the turtle icon represents the red-eared slider (Trachemys scripta), the frog icon corresponds to marsh frog (Pelophylax ridibundus) and the fish icon represents the pike-perch (Sander lucioperca).
ROC plot of True Positive Rate (sensitivity) and False Positive Rate (1-specificity) with the AUC values calculated using the model predicted probabilities and the recent invasion of the a) signal crayfish (Pacifastacus leniusculus), b) red-eared slider (Trachemys scripta), c) marsh frog (Pelophylax ridibundus) and d) pike-perch (Sander lucioperca).
Our models were highly capable to predict the last range expansion of the species (last six years). Independent data for evaluation is desirable to measure the ability of the predicted areas to be occupied. Model calibration and evaluation 1 aimed to replicate the standard practice in SDM evaluation (cross-validation using 70% and 30% of the data for training and testing, respectively) but splitting datasets using the chronological information of the range expansion instead of a random selection. Our models provided better than random models but with relatively low values of performance. The reason for low values in model performance arose from the sorting bias correction. Spatial sorting bias is known to inflate evaluation metrics (
The distribution of alien species is affected by both climatic and anthropogenic variables. Human population density can be an indicator of non‐native species propagule pressure (
Road density and proximity to garden centres favoured the spread of the red-slider suggesting that this species was introduced deliberately as pets (
Precipitation seasonality had a negative effect on pike-perch´s presence, which indicates that this species is unable to cope with variable flow regimens. In fact, for this species, seasonal weather patterns have been reported to affect spawning success, egg survival and post-hatching survival (
Most of the alien species we studied were more likely to be found closer to the places where they were first introduced, especially the marsh frog. This might be due to their limited ability to disperse due to climatic reasons. In this sense, further analysis is required to account for the type of dispersal followed by the different taxa. According to the importance of this predictor (i.e., “distance to the first records”), implementing management on areas surrounding the locations of the first introduction resulted highly important for all study species and supports the fact that effective early detection will facilitate the first management steps (
Considering the most important anthropogenic predictors driving each species expansion together with the predictive risk maps (i.e., presented suitability maps, which help to identify those localities most vulnerable to be invaded next) can guide decision making to allocate resources and prioritising management actions to prevent the arrival of the species to new locations, especially to those places of conservation importance, with endangered species or in protected areas (
This study was funded by the call “Ayudas para la realización de proyectos de investigación de la Universidad de Alcalá” (PIUAH22/CC-054) to M.R-R, and Marie Sklodowska-Curie ITN (AQUAINVAD-ED; Grant no. 642197) to S.C. M.R-R was supported by “Maria Zambrano” fellowship from the Spanish Ministry of Universities and Next Generation-EU.
M.R-R. and C.G.L conceived the idea. M.R-R. compiled and curated the data and M.R-R. and C.G.L. analysed the data. All authors interpreted the outputs, contributed to manuscript writing, gave approval for publication and agree to be accountable for any question related to this work.
All data used is derived from public domain resources. A reference script is available as supporting information.
We are grateful to the anonymous reviewers for their constructive and helpful comments on this manuscript. This paper was a contribution to the RIP4FISH (PIUAH22/CC-054) project financed by the University of Alcalá.
Supplementary information
Data type: docx
Explanation note: figure S1. Diagram of the workflow for Species Distribution Modelling in this study; figure S2.1. Response curves for signal crayfish (Pacifastacus leniusculus) according to GAM; figure S2.2. Response curves for red-eared slider (Trachemys scripta) according to GAM; figure S2.3. Response curves for marsh frog (Pelophylax ridibundus) according to MaxEnt. Negative values on the predictor, although unrealistic in some cases, resulted from the function projecting into the negative and positive range of values; figure S2.4. Response curves for pike-perch (Sander lucioperca) according to GAM; table S1. Characteristics of the species regarding the year and locality of introduction in the study area, the reason of their introduction, the way they commonly spread and their origin and functional type classification.; table S2. Number of occurrences and covered years used in each modelling step for the different species; table S3. Predictor variables used in the Species Distribution Models. Variables in bold had VIF scores smaller than 10 (Hairs et al. 1998) and were included in the Species Distribution Models; table S4. Variance Inflation Factor (VIF) for those predictors with VIF<10; table S5. True Skill Statistic (TSS) and Area Under the Curve (AUC) results for the models computed using four algorithms and the ensemble. Effect size corresponds to the difference between the real model and the null model 95 CI maximum value, calculated for both discrimination statistics.